Interpolated positions of the Affymetrix and Illumina GWA SNP panels

If you use these maps please be sure to cite one of our papers:

Rutgers Map v2 (second generation): Matise, TC et al. 2007. A second-generation combined linkage
     physical map of the human genome. Genome Res 17:1783-6.

Rutgers Map v3 (third generation): Nato, AQ, Buyske, S, and Matise, TC. 2011 (in prep). The Rutgers
     Map: A third-generation combined linkage-physical map of the human genome.

Download the files through the links below:

Build 37

• Illumina HumanCytoSNP-12 v2.1
• Illumina HumanOmniExpress 12v1
• Illumina HumanOmni1-Quad v1
• Illumina HumanOmni1S-8 v1
• Illumina HumanOmni2.5-Quad (rsIDs; Build 37 physical positions were obtained by liftOver)
• Illumina HumanOmni2.5-Quad (kgpIDs)
• Illumina HumanOmni2.5S-8 v1
• Illumina Human Omni5-Quad

Build 36

• Affymetrix 5.0
• Affymetrix 6.0
• Illumina 550
• Illumina 610
• Illumina Human660W Quad v1
• Illumina HumanOmniExpress 12v1
• Illumina Human1M
• Illumina HumanOmni Quad1
• Illumina Human1M duo v3
• Illumina HumanOmni2.5-Quad