Welcome to MAP-O-MAT, an automated marker-based linkage mapping server. The server uses publicly available genotype data for over 15,000 markers. You can learn more about the data here.

NOTE: The MAPOMAT functions (FIXED,FLIPS,ALL,ETC) are only linked to our Build35 first generation data. They have not yet been updated to link to our Build36 second generation map.

NOTE: Please sign up for our mailing list so we can alert you to future upgrades or changes. If you signed up for the mailing list prior to 10/20/2004, PLEASE SIGN UP AGAIN as security issues prevented our sign-up script from working properly until now. THANK YOU.

NOTE: The deCODE data were removed from the MAP-O-MAT database on 9/28/2004. If you have questions about this or if this affects your research, please e-mail Tara Matise. To make sure I see your e-mail please put MAP-O-MAT and/or deCODE data in the subject.

This data can be used to ask several map-related questions. All analyses are done using CRI-MAP (Phil Green, 1987) and are based on multipoint maximum likelihood evaluations. For each function we provide a description, demo, and results intrepretation. Be sure to read the Helpful Hints. The following functions are currently available:

FIXED - estimates map distances and FLIPS

FLIPS - calculates local support for order

ALL - inserts markers into existing map

View/Query Rutgers Map search the Rutgers combined linkage-physical map

deCODE - place a marker on to deCODE's map

Multiple Order Comparisons - compares the likelihood of different marker orders

Re-mapping analysis used to confirm marker localizations

Hints | About | Disclaimer

This page was last modified:
Friday May 30 2008 03:33:18 AM EDT