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| Gene | GeneID | Cytoband | Start Position (bp) | End Position (bp) | Size (bp) | Status | Description |
| ACTBP11 | 644220 | 1q41 | 224051228 | 224052637 | 1409 | INFERRED | actin, beta pseudogene 11 |
| AKR1B1P1 | 401982 | 1q42.12 | 224762103 | 224763290 | 1187 | INFERRED | aldehyde reductase family 1, member B1 pseudogene 1 |
| BTF3P9 | 503543 | 1q42 | 227621767 | 227622307 | 540 | INFERRED | basic transcription factor 3 pseudogene 9 |
| C1orf31 | 388753 | 1q42.2 | 234509429 | 234519791 | 10362 | PREDICTED | chromosome 1 open reading frame 31 |
| CDKN2AIPNLP1 | 391169 | 1q42.12 | 226680889 | 226681257 | 368 | MODEL | CDKN2A interacting protein N-terminal like pseudogene 1 |
| CICP5 | 730978 | 1q42.11 | 224133977 | 224137163 | 3186 | INFERRED | capicua homolog (Drosophila) pseudogene 5 |
| FLJ30430 | 149373 | 1q42.2 | 231319845 | 231322208 | 2363 | MODEL | hypothetical protein FLJ30430 |
| HIST3H2BA | 337872 | 1q42.13 | 228651917 | 228652295 | 378 | INFERRED | histone cluster 3, H2ba, pseudogene |
| HMGB1P26 | 645201 | 1q42.13 | 229840958 | 229841610 | 652 | INFERRED | high mobility group box 1 pseudogene 26 |
| ISCA1P2 | 100288517 | 1q42.13 | 229177839 | 229178336 | 497 | INFERRED | iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 2 |
| KRT18P32 | 391179 | 1q43 | 238654605 | 238656001 | 1396 | INFERRED | keratin 18 pseudogene 32 |
| LDHAP2 | 100190799 | 1q42.3 | 235901195 | 235902909 | 1714 | INFERRED | lactate dehydrogenase A pseudogene 2 |
| LEFTY3 | 286754 | 1q42.1 | 225990859 | 225991155 | 296 | INFERRED | LEFTY family pseudogene |
| LOC100126822 | 100126822 | 1q42.13 | 227451027 | 227452891 | 1864 | INFERRED | ubiquitin-like modifier activating enzyme 5 pseudogene |
| LOC100129094 | 100129094 | 1q42.13 | 228696347 | 228699658 | 3311 | MODEL | similar to hCG2036765 |
| LOC100130466 | 100130466 | 1q42.13 | 227598326 | 227611483 | 13157 | MODEL | nuclear ubiquitous casein and cyclin-dependent kinases substrate-like |
| LOC100130485 | 100130485 | 1q42.3 | 236448774 | 236450303 | 1529 | INFERRED | FK506 binding protein 3, 25kDa pseudogene |
| LOC100131725 | 100131725 | 1q42.3 | 235777982 | 235779696 | 1714 | INFERRED | solute carrier family 39 (zinc transporter), member 14 pseudogene |
| LOC100131767 | 100131767 | 1q42.13 | 228162980 | 228163386 | 406 | MODEL | hypothetical LOC100131767 |
| LOC100131918 | 100131918 | 1q42.13 | 229824747 | 229825651 | 904 | INFERRED | KIAA1191 pseudogene |
| LOC100132885 | 100132885 | 1q42.13 | 228156662 | 228160386 | 3724 | MODEL | hypothetical LOC100132885 |
| LOC100133049 | 100133049 | 1q42.11 | 224137784 | 224138178 | 394 | MODEL | hypothetical LOC100133049 |
| LOC100271842 | 100271842 | 1q42 | 227466151 | 227467218 | 1067 | INFERRED | phosphatidylinositol 4-kinase type 2 beta pseudogene |
| LOC100287497 | 100287497 | 1q42.11 | 224196244 | 224197161 | 917 | MODEL | similar to Transmembrane protein FLJ23183 |
| LOC100288102 | 100288102 | 1q42.11 | 224170752 | 224180346 | 9594 | MODEL | hypothetical LOC100288102 |
| LOC100288177 | 100288177 | 1q42.12 | 224848881 | 224849580 | 699 | MODEL | dnaJ homolog subfamily B member 6-like |
| LOC100288703 | 100288703 | 1q42.2 | 231253593 | 231254071 | 478 | MODEL | peptidyl-prolyl cis-trans isomerase A-like |
| LOC100288950 | 100288950 | 1q43 | 238106118 | 238106953 | 835 | MODEL | NADH-ubiquinone oxidoreductase chain 1-like |
| LOC100418822 | 100418822 | - | 235523680 | 235525879 | 2199 | INFERRED | atrophin 1 pseudogene |
| LOC100418874 | 100418874 | - | 227421892 | 227423055 | 1163 | INFERRED | cathepsin B pseudogene |
| LOC100421606 | 100421606 | - | 227786131 | 227786834 | 703 | INFERRED | family with sequence similarity 133, member A pseudogene |
| LOC100421842 | 100421842 | - | 228912059 | 228912612 | 553 | INFERRED | eukaryotic translation elongation factor 1 alpha 2 pseudogene |
| LOC100422394 | 100422394 | - | 223741880 | 223742862 | 982 | INFERRED | NACC family member 2, BEN and BTB (POZ) domain containing pseudogene |
| LOC100506213 | 100506213 | - | 224026717 | 224031332 | 4615 | MODEL | hypothetical LOC100506213 |
| LOC100506354 | 100506354 | - | 224622614 | 224709707 | 87093 | MODEL | hypothetical LOC100506354 |
| LOC100506398 | 100506398 | - | 226259263 | 226284420 | 25157 | MODEL | hypothetical LOC100506398 |
| LOC100506443 | 100506443 | - | 226844343 | 226862769 | 18426 | MODEL | hypothetical LOC100506443 |
| LOC100506479 | 100506479 | - | 228155941 | 228156457 | 516 | MODEL | hypothetical LOC100506479 |
| LOC100506571 | 100506571 | - | 228261610 | 228264251 | 2641 | MODEL | hypothetical protein LOC100506571 |
| LOC100506628 | 100506628 | - | 228291253 | 228304782 | 13529 | MODEL | hypothetical LOC100506628 |
| LOC100506642 | 100506642 | - | 228351795 | 228352549 | 754 | MODEL | hypothetical LOC100506642 |
| LOC100506656 | 100506656 | - | 228459435 | 228459939 | 504 | MODEL | obscurin-like |
| LOC100506778 | 100506778 | - | 234508553 | 234509379 | 826 | MODEL | hypothetical LOC100506778 |
| LOC100506795 | 100506795 | 1q42-q43 | 234663637 | 234667525 | 3888 | MODEL | hypothetical LOC100506795 |
| LOC100506810 | 100506810 | 1q42-q43 | 234859789 | 234867390 | 7601 | MODEL | hypothetical LOC100506810 |
| LOC100506876 | 100506876 | - | 236889913 | 236890471 | 558 | MODEL | hypothetical protein LOC100506876 |
| LOC255208 | 255208 | 1q42.13 | 227693883 | 227696002 | 2119 | INFERRED | tubulin, beta 8 pseudogene |
| LOC343508 | 343508 | 1q42.3 | 236273361 | 236275672 | 2311 | MODEL | aconitate hydratase, mitochondrial-like |
| LOC391171 | 391171 | 1q42.13 | 227680552 | 227682528 | 1976 | INFERRED | tubulin, beta 8 pseudogene |
| LOC391174 | 391174 | 1q42.13 | 228302691 | 228303170 | 479 | INFERRED | family with sequence similarity 96, member A pseudogene |
| LOC441124 | 441124 | 1q42.11 | 224138969 | 224141141 | 2172 | MODEL | hypothetical gene supported by AK093729; BX647918 |
| LOC644482 | 644482 | 1q42.12 | 226151881 | 226152134 | 253 | MODEL | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like |
| LOC645395 | 645395 | 1q42.2 | 232994116 | 233053770 | 59654 | MODEL | uncharacterized protein C9orf78-like |
| LOC648262 | 648262 | 1q42.13 | 228163473 | 228165863 | 2390 | INFERRED | capicua homolog (Drosophila) pseudogene |
| LOC724084 | 724084 | 1q42.11 | 224362849 | 224363612 | 763 | INFERRED | zinc finger protein 706 pseudogene |
| LOC728728 | 728728 | 1q42.13 | 228154712 | 228155941 | 1229 | MODEL | putative uncharacterized protein encoded by NCRNA00174-like |
| LOC729033 | 729033 | 1q42.13 | 228161052 | 228161829 | 777 | MODEL | putative uncharacterized protein FLJ44672-like |
| MRP63P2 | 359729 | 1q42.13 | 227759941 | 227760148 | 207 | INFERRED | mitochondrial ribosomal protein 63 pseudogene 2 |
| MT1P2 | 645745 | 1q43 | 237167347 | 237167743 | 396 | INFERRED | metallothionein 1 pseudogene 2 |
| PHBP11 | 644214 | 1q41 | 224044284 | 224045089 | 805 | INFERRED | prohibitin pseudogene 11 |
| PP2672 | 100130249 | 1q42.3 | 234893366 | 234895803 | 2437 | MODEL | hypothetical LOC100130249 |
| RNY4P16 | 100431173 | 1q42.11 | 234973723 | 234973790 | 67 | INFERRED | RNA, Ro-associated Y4 pseudogene 16 |
| RPL23AP15 | 391175 | 1q42.13 | 228636869 | 228637322 | 453 | INFERRED | ribosomal protein L23a pseudogene 15 |
| RPL23AP23 | 100271292 | 1q43 | 235459182 | 235459652 | 470 | INFERRED | ribosomal protein L23a pseudogene 23 |
| RPL34P7 | 100127995 | 1q42.12 | 226376569 | 226376922 | 353 | INFERRED | ribosomal protein L34 pseudogene 7 |
| RPL35P1 | 440737 | 1q43 | 237144609 | 237145043 | 434 | INFERRED | ribosomal protein L35 pseudogene 1 |
| RPL9P10 | 100270855 | 1q42.2 | 234420697 | 234421402 | 705 | INFERRED | ribosomal protein L9 pseudogene 10 |
| RPS15P2 | 100271066 | 1q42.2 | 234492419 | 234492916 | 497 | INFERRED | ribosomal protein S15 pseudogene 2 |
| RPS18P3 | 100128258 | 1q42.13 | 227618183 | 227618720 | 537 | INFERRED | ribosomal protein S18 pseudogene 3 |
| RPS21P1 | 100271090 | 1q42.3 | 235596300 | 235596539 | 239 | INFERRED | ribosomal protein S21 pseudogene 1 |
| RPS24P4 | 729257 | 1q42.2 | 230747689 | 230748194 | 505 | INFERRED | ribosomal protein S24 pseudogene 4 |
| RPS27P5 | 100271116 | 1q42.13 | 226969202 | 226969446 | 244 | INFERRED | ribosomal protein S27 pseudogene 5 |
| RPS28P3 | 644862 | 1q42.13 | 228322483 | 228324494 | 2011 | INFERRED | ribosomal protein S28 pseudogene 3 |
| RPS3AP7 | 391168 | 1q42.12 | 226626233 | 226627095 | 862 | INFERRED | ribosomal protein S3a pseudogene 7 |
| TRNAL45P | 100189520 | 1q43 | 238106956 | 238107030 | 74 | INFERRED | transfer RNA leucine 45 (anticodon UAA) pseudogene |
| TRNAP23P | 100189463 | 1q43 | 238105862 | 238105933 | 71 | INFERRED | transfer RNA proline 23 (anticodon UGG) pseudogene |
| VN1R15P | 100312804 | 1q42.13 | 227846868 | 227847431 | 563 | INFERRED | vomeronasal 1 receptor 15 pseudogene |