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| Gene | GeneID | Cytoband | Start Position (bp) | End Position (bp) | Size (bp) | Status | Description |
| 5-HT3C2 | 389180 | 3q27.1 | 183794434 | 183802119 | 7685 | INFERRED | 5-HT3c2 serotonin receptor-like protein pseudogene |
| ASS1P7 | 339845 | 3q26.32 | 177014711 | 177016276 | 1565 | INFERRED | argininosuccinate synthetase 1 pseudogene 7 |
| ATP5G1P4 | 100287755 | 3q26.31 | 172546521 | 172547065 | 544 | MODEL | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 4 |
| BZW1P1 | 391592 | 3q26.31 | 172141976 | 172144954 | 2978 | INFERRED | basic leucine zipper and W2 domains 1 pseudogene 1 |
| C3orf70 | 285382 | 3q27.2 | 184795838 | 184870802 | 74964 | PREDICTED | chromosome 3 open reading frame 70 |
| CBX1P5 | 100133259 | 3q26.1 | 166528617 | 166530530 | 1913 | INFERRED | chromobox homolog 1 pseudogene 5 |
| CCT6P4 | 100130481 | 3q28 | 190432497 | 190435166 | 2669 | INFERRED | chaperonin containing TCP1, subunit 6 (zeta) pseudogene 4 |
| EEF1A1P23 | 100421815 | - | 193296604 | 193297202 | 598 | INFERRED | eukaryotic translation elongation factor 1 alpha 1 pseudogene 23 |
| EIF3EP4 | 100422200 | - | 182561361 | 182562408 | 1047 | INFERRED | eukaryotic translation initiation factor 3, subunit E pseudogene 4 |
| FAUP2 | 100271125 | 3q26.33 | 180960393 | 180960689 | 296 | INFERRED | FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 2 |
| FGFR3P4 | 100420833 | - | 177418089 | 177418860 | 771 | INFERRED | fibroblast growth factor receptor 3 pseudogene 4 |
| FLYWCH1P1 | 100130898 | 3q26.33 | 180545786 | 180547634 | 1848 | INFERRED | FLYWCH-type zinc finger 1 pseudogene 1 |
| GAPDHP36 | 647249 | 3q26.33 | 179929978 | 179931001 | 1023 | INFERRED | glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 |
| GCNT1P3 | 100421581 | - | 190342388 | 190342955 | 567 | INFERRED | glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 3 |
| HSP90AA5P | 730211 | 3q27.1 | 183833630 | 183835791 | 2161 | INFERRED | heat shock protein 90kDa alpha (cytosolic), class A member 5 (pseudogene) |
| KRT18P43 | 151825 | 3q26.2 | 169620701 | 169622086 | 1385 | INFERRED | keratin 18 pseudogene 43 |
| KRT8P13 | 730023 | 3q26.2 | 170213154 | 170214885 | 1731 | INFERRED | keratin 8 pseudogene 13 |
| LOC100128262 | 100128262 | 3q29 | 195634947 | 195638129 | 3182 | MODEL | hypothetical LOC100128262 |
| LOC100129423 | 100129423 | 3q26.32 | 175785809 | 175786814 | 1005 | MODEL | etoposide-induced protein 2.4 homolog |
| LOC100129725 | 100129725 | 3q28 | 191668900 | 191669536 | 636 | INFERRED | similar to p53-induced protein PIGPC1 |
| LOC100131216 | 100131216 | 3q26.32 | 175831488 | 175832164 | 676 | INFERRED | transmembrane protein 38B pseudogene |
| LOC100131360 | 100131360 | 3q29 | 195719846 | 195725757 | 5911 | MODEL | serine/threonine-protein phosphatase 4 regulatory subunit 2-like |
| LOC100131685 | 100131685 | 3q28 | 190548754 | 190549962 | 1208 | INFERRED | enabled homolog (Drosophila) pseudogene |
| LOC100131868 | 100131868 | 3q29 | 197361186 | 197362926 | 1740 | MODEL | serine/threonine-protein phosphatase 4 regulatory subunit 2-like |
| LOC100131977 | 100131977 | 3q27.1 | 183331351 | 183333054 | 1703 | INFERRED | prickle homolog 1 (Drosophila) pseudogene |
| LOC100132058 | 100132058 | 3q27.3 | 186490384 | 186491247 | 863 | INFERRED | G protein pathway suppressor 2 pseudogene |
| LOC100132223 | 100132223 | 3q26.33 | 180538332 | 180539405 | 1073 | INFERRED | actin, beta pseudogene |
| LOC100132319 | 100132319 | 3q28 | 188868602 | 188868763 | 161 | NA | hypothetical LOC100132319 |
| LOC100132918 | 100132918 | 3q26.33 | 182178208 | 182178842 | 634 | INFERRED | eukaryotic translation initiation factor 4E pseudogene |
| LOC100133326 | 100133326 | 3q29 | 195664114 | 195665682 | 1568 | MODEL | serine/threonine-protein phosphatase 4 regulatory subunit 2-like |
| LOC100287402 | 100287402 | 3q27.3 | 186314765 | 186315089 | 324 | INFERRED | hypothetical LOC100287402 |
| LOC100287630 | 100287630 | 3q26.1 | 166408976 | 166409502 | 526 | INFERRED | phosphoserine aminotransferase 1 pseuodogene |
| LOC100288016 | 100288016 | 3q29 | 195377021 | 195378509 | 1488 | MODEL | serine/threonine-protein phosphatase 4 regulatory subunit 2-like |
| LOC100288115 | 100288115 | 3q29 | 195726134 | 195727926 | 1792 | MODEL | hypothetical LOC100288115 |
| LOC100288553 | 100288553 | 3q29 | 195372725 | 195379030 | 6305 | MODEL | hypothetical LOC100288553 |
| LOC100288802 | 100288802 | 3q29 | 194283707 | 194284730 | 1023 | MODEL | similar to hCG1776279 |
| LOC100419880 | 100419880 | - | 195570859 | 195571467 | 608 | INFERRED | kinesin family member 3A pseudogene |
| LOC100420620 | 100420620 | - | 165899099 | 165899758 | 659 | INFERRED | coiled-coil domain containing 90A pseudogene |
| LOC100420621 | 100420621 | - | 189686819 | 189687650 | 831 | INFERRED | methylthioadenosine phosphorylase pseudogene |
| LOC100420939 | 100420939 | - | 172398504 | 172399011 | 507 | INFERRED | nucleosome assembly protein 1-like 5 pseudogene |
| LOC100421238 | 100421238 | - | 175392871 | 175394583 | 1712 | INFERRED | DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene |
| LOC100421510 | 100421510 | - | 169649786 | 169651020 | 1234 | INFERRED | family with sequence similarity 20, member B pseudogene |
| LOC100421774 | 100421774 | - | 174777105 | 174777883 | 778 | INFERRED | eukaryotic translation elongation factor 1 beta 2 pseudogene |
| LOC100421819 | 100421819 | - | 169780128 | 169780741 | 613 | INFERRED | SET domain containing (lysine methyltransferase) 8 pseudogene |
| LOC100505473 | 100505473 | - | 169165655 | 169194840 | 29185 | MODEL | hypothetical LOC100505473 |
| LOC100505492 | 100505492 | - | 169706063 | 169711204 | 5141 | MODEL | hypothetical LOC100505492 |
| LOC100505508 | 100505508 | - | 170712220 | 170713456 | 1236 | MODEL | hypothetical LOC100505508 |
| LOC100505528 | 100505528 | - | 172427787 | 172443953 | 16166 | MODEL | hypothetical LOC100505528 |
| LOC100505547 | 100505547 | - | 176321948 | 176353320 | 31372 | MODEL | hypothetical LOC100505547 |
| LOC100505566 | 100505566 | - | 177159709 | 177470492 | 310783 | MODEL | hypothetical LOC100505566 |
| LOC100505598 | 100505598 | - | 179616017 | 179639683 | 23666 | MODEL | hypothetical LOC100505598 |
| LOC100505609 | 100505609 | - | 180131961 | 180140281 | 8320 | MODEL | hypothetical LOC100505609 |
| LOC100505642 | 100505642 | - | 182673023 | 182674095 | 1072 | MODEL | uncharacterized protein C9orf85 homolog |
| LOC100505668 | 100505668 | - | 183005268 | 183016292 | 11024 | MODEL | hypothetical LOC100505668 |
| LOC100505687 | 100505687 | - | 183165396 | 183173801 | 8405 | MODEL | hypothetical LOC100505687 |
| LOC100505710 | 100505710 | - | 184451863 | 184456733 | 4870 | MODEL | hypothetical LOC100505710 |
| LOC100505729 | 100505729 | - | 184530295 | 184534023 | 3728 | MODEL | hypothetical LOC100505729 |
| LOC100505749 | 100505749 | - | 185000749 | 185010867 | 10118 | MODEL | hypothetical LOC100505749 |
| LOC100505787 | 100505787 | - | 185352893 | 185354851 | 1958 | MODEL | hypothetical LOC100505787 |
| LOC100505816 | 100505816 | - | 186650391 | 186650802 | 411 | MODEL | hypothetical LOC100505816 |
| LOC100505844 | 100505844 | - | 187683556 | 187694195 | 10639 | MODEL | hypothetical LOC100505844 |
| LOC100505861 | 100505861 | - | 188817910 | 188868925 | 51015 | MODEL | hypothetical LOC100505861 |
| LOC100505902 | 100505902 | - | 193727752 | 193788741 | 60989 | MODEL | hypothetical LOC100505902 |
| LOC100505920 | 100505920 | - | 193920805 | 193967942 | 47137 | MODEL | hypothetical LOC100505920 |
| LOC100507033 | 100507033 | - | 194217046 | 194222232 | 5186 | MODEL | hypothetical LOC100507033 |
| LOC100507057 | 100507057 | - | 196729771 | 196731615 | 1844 | MODEL | hypothetical LOC100507057 |
| LOC100507086 | 100507086 | - | 197025118 | 197030618 | 5500 | MODEL | hypothetical LOC100507086 |
| LOC100507153 | 100507153 | - | 197375053 | 197376259 | 1206 | MODEL | hypothetical LOC100507153 |
| LOC100507297 | 100507297 | 3q29 | 194305028 | 194311268 | 6240 | MODEL | hypothetical LOC100507297 |
| LOC100507574 | 100507574 | - | 196047860 | 196049435 | 1575 | MODEL | hypothetical LOC100507574 |
| LOC100507595 | 100507595 | - | 196367242 | 196367712 | 470 | MODEL | hypothetical LOC100507595 |
| LOC100507661 | 100507661 | - | 168619733 | 168639784 | 20051 | MODEL | hypothetical LOC100507661 |
| LOC131054 | 131054 | 3q26.33 | 180040898 | 180042849 | 1951 | INFERRED | ralA binding protein 1 pseudogene |
| LOC131055 | 131055 | 3q26.1 | 166783577 | 166784341 | 764 | INFERRED | peptidylprolyl isomerase A pseudogene |
| LOC253573 | 253573 | 3q27.3 | 186172770 | 186211450 | 38680 | PREDICTED | hypothetical LOC253573 |
| LOC285303 | 285303 | 3q29 | 194476203 | 194478245 | 2042 | INFERRED | family with sequence similarity 151, member A pseudogene |
| LOC391600 | 391600 | 3q27.1 | 184217370 | 184218061 | 691 | INFERRED | transmembrane epididymal protein 1 pseudogene |
| LOC391603 | 391603 | 3q28 | 189884553 | 189885418 | 865 | INFERRED | nicotinamide nucleotide adenylyltransferase 1 pseudogene |
| LOC440993 | 440993 | 3q29 | 195427011 | 195438746 | 11735 | MODEL | hypothetical LOC440993 |
| LOC442097 | 442097 | 3q26.31 | 175695284 | 175696355 | 1071 | INFERRED | actin, gamma 1 pseudogene |
| LOC442098 | 442098 | 3q26.33 | 179182134 | 179183119 | 985 | INFERRED | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene |
| LOC647253 | 647253 | 3q26.33 | 180488507 | 180491845 | 3338 | INFERRED | ring finger protein 13 pseudogene |
| LOC647265 | 647265 | 3q27.1 | 183613688 | 183628724 | 15036 | MODEL | cytochrome P450 2J5-like |
| LOC647299 | 647299 | 3q28 | 188707174 | 188707924 | 750 | INFERRED | enolase-phosphatase 1 pseudogene |
| LOC651714 | 651714 | 3q29 | 195345528 | 195347105 | 1577 | INFERRED | mucin 20, cell surface associated pseudogene |
| LOC727978 | 727978 | 3q29 | 195666635 | 195682573 | 15938 | MODEL | hypothetical LOC727978 |
| MEMO1P3 | 100462782 | - | 167606118 | 167606505 | 387 | INFERRED | mediator of cell motility 1 pseudogene 3 |
| PSMD10P2 | 280644 | 3q27.3 | 186478900 | 186481614 | 2714 | INFERRED | proteasome 26S subunit, non-ATPase, 10 pseudogene 2 |
| RNU3P4 | 26842 | 3q27.1 | 182892725 | 182892795 | 70 | INFERRED | RNA, U3 small nucleolar pseudogene 4 |
| RNU4-4P | 26840 | 3q26.31 | 172514198 | 172514400 | 202 | INFERRED | RNA, U4 small nuclear 4 (pseudogene) |
| RNU7-32P | 100147819 | 3q26.2 | 169878724 | 169878782 | 58 | INFERRED | RNA, U7 small nuclear 32 pseudogene |
| RNY5P3 | 100379664 | 3q26.2 | 170559887 | 170559961 | 74 | INFERRED | RNA, Ro-associated Y5 pseudogene 3 |
| RPL21P43 | 100271163 | 3q26.2 | 168576410 | 168576960 | 550 | INFERRED | ribosomal protein L21 pseudogene 43 |
| RPL29P9 | 647285 | 3q27.3 | 186639941 | 186640589 | 648 | INFERRED | ribosomal protein L29 pseudogene 9 |
| RPL31P22 | 100270989 | 3q29 | 195070404 | 195070759 | 355 | INFERRED | ribosomal protein L31 pseudogene 22 |
| RPL32P10 | 391595 | 3q26.33 | 180605458 | 180605863 | 405 | INFERRED | ribosomal protein L32 pseudogene 10 |
| RPL34P10 | 100271004 | 3q27.2 | 185324363 | 185324662 | 299 | INFERRED | ribosomal protein L34 pseudogene 10 |
| RPL36P7 | 100271010 | 3q29 | 197307221 | 197307500 | 279 | INFERRED | ribosomal protein L36 pseudogene 7 |
| RPL39P19 | 100271027 | 3q27 | 186838742 | 186839137 | 395 | INFERRED | ribosomal protein L39 pseudogene 19 |
| RPL4P4 | 647276 | 3q27.2 | 185135196 | 185136622 | 1426 | INFERRED | ribosomal protein L4 pseudogene 4 |
| RPL7AP25 | 100271042 | 3q26.33 | 181222797 | 181223691 | 894 | INFERRED | ribosomal protein L7a pseudogene 25 |
| RPL7L1P8 | 402152 | 3q26.33 | 182328457 | 182329210 | 753 | INFERRED | ribosomal protein L7-like 1 pseudogene 8 |
| RPL8P4 | 402150 | 3q26.31 | 174094999 | 174095830 | 831 | INFERRED | ribosomal protein L8 pseudogene 4 |
| RPS20P14 | 440992 | 3q27.3 | 186617862 | 186618386 | 524 | INFERRED | ribosomal protein S20 pseudogene 14 |
| RPS27AP8 | 100271375 | 3q26.31 | 171943218 | 171943659 | 441 | INFERRED | ribosomal protein S27a pseudogene 8 |
| RPS29P3 | 642892 | 3q29 | 196263373 | 196263663 | 290 | INFERRED | ribosomal protein S29 pseudogene 3 |
| RPS3P3 | 440991 | 3q27.1 | 183867462 | 183868308 | 846 | INFERRED | ribosomal protein S3 pseudogene 3 |
| RPSAP30 | 728126 | 3q29 | 196717463 | 196727294 | 9831 | INFERRED | ribosomal protein SA pseudogene 30 |
| RPSAP31 | 391598 | 3q27.1 | 183605310 | 183606325 | 1015 | INFERRED | ribosomal protein SA pseudogene 31 |
| RPSAP33 | 647158 | 3q26.2 | 168384347 | 168384959 | 612 | INFERRED | ribosomal protein SA pseudogene 33 |
| SDHDP3 | 29771 | 3q26.3 | 169427060 | 169428366 | 1306 | INFERRED | succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 3 |
| SLC31A1P1 | 117151 | 3q25-q26 | 172317176 | 172321973 | 4797 | INFERRED | solute carrier family 31 (copper transporters), member 1 pseudogene 1 |
| UBE2V1P2 | 730052 | 3q26.31 | 175435790 | 175436470 | 680 | INFERRED | ubiquitin-conjugating enzyme E2 variant 1 pseudogene 2 |
| VEZF1L1 | 647319 | 3q29 | 192871326 | 192875088 | 3762 | INFERRED | vascular endothelial zinc finger 1-like 1 |