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| Gene | GeneID | Cytoband | Start Position (bp) | End Position (bp) | Size (bp) | Status | Description |
| BPHL | 670 | 6p25 | 3118926 | 3153432 | 34506 | REVIEWED | biphenyl hydrolase-like (serine hydrolase) |
| C6orf145 | 221749 | 6p25.2 | 3722836 | 3752246 | 29410 | VALIDATED | chromosome 6 open reading frame 145 |
| C6orf146 | 222826 | 6p25.2 | 4068601 | 4079391 | 10790 | VALIDATED | chromosome 6 open reading frame 146 |
| C6orf195 | 154386 | 6p25.2 | 2622972 | 2635298 | 12326 | VALIDATED | chromosome 6 open reading frame 195 |
| C6orf201 | 404220 | 6p25.2 | 4079440 | 4130999 | 51559 | VALIDATED | chromosome 6 open reading frame 201 |
| CDYL | 9425 | 6p25.1 | 4706393 | 4955778 | 249385 | REVIEWED | chromodomain protein, Y-like |
| CNN3P1 | 643875 | 6p25.1 | 6534930 | 6535861 | 931 | INFERRED | calponin 3, acidic pseudogene 1 |
| DKFZP686I15217 | 401232 | 6p25.2 | 2988201 | 2991405 | 3204 | VALIDATED | hypothetical LOC401232 |
| DUSP22 | 56940 | 6p25.3 | 292101 | 351355 | 59254 | PROVISIONAL | dual specificity phosphatase 22 |
| ECI2 | 10455 | 6p24.3 | 4115927 | 4135831 | 19904 | VALIDATED | enoyl-CoA delta isomerase 2 |
| ELF2P2 | 260335 | 6p25.3 | 1512576 | 1515467 | 2891 | INFERRED | E74-like factor 2 pseudogene 2 |
| EXOC2 | 55770 | 6p25.3 | 485138 | 693109 | 207971 | REVIEWED | exocyst complex component 2 |
| F13A1 | 2162 | 6p25.3-p24.3 | 6144311 | 6320924 | 176613 | REVIEWED | coagulation factor XIII, A1 polypeptide |
| FAM136BP | 387071 | 6p25.2 | 3045618 | 3046034 | 416 | INFERRED | family with sequence similarity 136, member B, pseudogene |
| FAM50B | 26240 | 6p25.2 | 3849632 | 3851551 | 1919 | PROVISIONAL | family with sequence similarity 50, member B |
| FARS2 | 10667 | 6p25.1 | 5261584 | 5771816 | 510232 | REVIEWED | phenylalanyl-tRNA synthetase 2, mitochondrial |
| FLJ43763 | 642316 | 6p25.3 | 203313 | 206392 | 3079 | MODEL | hypothetical LOC642316 |
| FLJ46552 | 401230 | 6p25.3 | 1617524 | 1620998 | 3474 | MODEL | FLJ46552 protein |
| FOXC1 | 2296 | 6p25 | 1610681 | 1614132 | 3451 | REVIEWED | forkhead box C1 |
| FOXF2 | 2295 | 6p25.3 | 1390069 | 1395832 | 5763 | REVIEWED | forkhead box F2 |
| FOXQ1 | 94234 | 6p25 | 1312675 | 1314993 | 2318 | VALIDATED | forkhead box Q1 |
| GMDS | 2762 | 6p25 | 1624041 | 2245846 | 621805 | VALIDATED | GDP-mannose 4,6-dehydratase |
| HMGN2P28 | 100128372 | 6p25.2 | 2245981 | 2413825 | 167844 | INFERRED | high mobility group nucleosomal binding domain 2 pseudogene 28 |
| HUS1B | 135458 | 6p25.3 | 655939 | 656964 | 1025 | REVIEWED | HUS1 checkpoint homolog b (S. pombe) |
| IRF4 | 3662 | 6p25-p23 | 391752 | 411443 | 19691 | REVIEWED | interferon regulatory factor 4 |
| KU-MEL-3 | 497048 | 6p25.3-p24.1 | 4610846 | 4612153 | 1307 | MODEL | KU-MEL-3 |
| LOC100128914 | 100128914 | 6p25.1 | 5817654 | 5932095 | 114441 | MODEL | hypothetical LOC100128914 |
| LOC100129033 | 100129033 | 6p25.1 | 5044980 | 5045900 | 920 | MODEL | QIQN5815 |
| LOC100129052 | 100129052 | 6p25.2 | 4189495 | 4190042 | 547 | INFERRED | N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) pseudogene |
| LOC100129461 | 100129461 | 6p25.1 | 5030275 | 5031354 | 1079 | MODEL | hypothetical LOC100129461 |
| LOC100129626 | 100129626 | 6p25.2 | 3694154 | 3694309 | 155 | MODEL | mitochondrial import receptor subunit TOM5 homolog |
| LOC100132153 | 100132153 | 6p25.2 | 3177273 | 3179949 | 2676 | INFERRED | tubulin, beta 2B pseudogene |
| LOC100421379 | 100421379 | - | 5609463 | 5610431 | 968 | INFERRED | heterogeneous nuclear ribonucleoprotein A1 pseudogene |
| LOC100421511 | 100421511 | - | 669080 | 670307 | 1227 | INFERRED | MAP/microtubule affinity-regulating kinase 2 pseudogene |
| LOC100507194 | 100507194 | - | 3183049 | 3196001 | 12952 | MODEL | hypothetical LOC100507194 |
| LOC100507294 | 100507294 | - | 3228159 | 3287301 | 59142 | MODEL | hypothetical LOC100507294 |
| LOC100507336 | 100507336 | - | 3594614 | 3720314 | 125700 | MODEL | hypothetical LOC100507336 |
| LOC100507506 | 100507506 | - | 4136306 | 4157619 | 21313 | MODEL | hypothetical LOC100507506 |
| LOC100507603 | 100507603 | - | 5451916 | 5458280 | 6364 | MODEL | hypothetical LOC100507603 |
| LOC285768 | 285768 | 6p25.3 | 961241 | 1101567 | 140326 | PREDICTED | hypothetical LOC285768 |
| LOC401233 | 401233 | 6p25.2 | 3020390 | 3025005 | 4615 | VALIDATED | HIV-1 Tat specific factor 1 pseudogene |
| LOC442155 | 442155 | 6p25.1 | 5066041 | 5067216 | 1175 | INFERRED | transcription factor B2, mitochondrial pseudogene |
| LOC442156 | 442156 | 6p25.1 | 5972621 | 5974239 | 1618 | INFERRED | pyruvate kinase, muscle pseudogene |
| LOC643327 | 643327 | 6p25.2 | 3456035 | 3469245 | 13210 | NA | hypothetical LOC643327 |
| LOC728344 | 728344 | 6p25.2 | 3978275 | 3979530 | 1255 | INFERRED | glutaredoxin 3 pseudogene |
| LY86-AS1 | 285780 | 6p25.1 | 6346698 | 6623059 | 276361 | VALIDATED | LY86 antisense RNA 1 (non-protein coding) |
| LYRM4 | 57128 | 6p25.1 | 5108653 | 5261172 | 152519 | VALIDATED | LYR motif containing 4 |
| MGC39372 | 221756 | 6p25.2 | 2854891 | 2876744 | 21853 | VALIDATED | serpin peptidase inhibitor, clade B (ovalbumin), member 9 pseudogene |
| MYLK4 | 340156 | 6p25.2 | 2663863 | 2751154 | 87291 | VALIDATED | myosin light chain kinase family, member 4 |
| NQO2 | 4835 | 6pter-q12 | 3000067 | 3019994 | 19927 | VALIDATED | NAD(P)H dehydrogenase, quinone 2 |
| NRN1 | 51299 | 6p25.1 | 5998232 | 6007633 | 9401 | REVIEWED | neuritin 1 |
| PPP1R3G | 648791 | 6p25.1 | 5085720 | 5087455 | 1735 | VALIDATED | protein phosphatase 1, regulatory (inhibitor) subunit 3G |
| PRPF4B | 8899 | 6p25.2 | 4021569 | 4065217 | 43648 | REVIEWED | PRP4 pre-mRNA processing factor 4 homolog B (yeast) |
| PSMC1P11 | 442153 | 6p25.1 | 4702676 | 4704209 | 1533 | INFERRED | proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 11 |
| PSMG4 | 389362 | 6p25.2 | 3259162 | 3268300 | 9138 | VALIDATED | proteasome (prosome, macropain) assembly chaperone 4 |
| RIPK1 | 8737 | 6p25.2 | 3077058 | 3115421 | 38363 | VALIDATED | receptor (TNFRSF)-interacting serine-threonine kinase 1 |
| RPL34P16 | 100133294 | 6p25.1 | 5788543 | 5788965 | 422 | INFERRED | ribosomal protein L34 pseudogene 16 |
| RPP40 | 10799 | 6p25.1 | 4995280 | 5004271 | 8991 | VALIDATED | ribonuclease P/MRP 40kDa subunit |
| RPS18P8 | 643627 | 6p25.1 | 4979263 | 4979766 | 503 | INFERRED | ribosomal protein S18 pseudogene 8 |
| RPS25P7 | 100271103 | 6p25 | 3914109 | 3914555 | 446 | INFERRED | ribosomal protein S25 pseudogene 7 |
| SERPINB1 | 1992 | 6p25 | 2833733 | 2842081 | 8348 | PROVISIONAL | serpin peptidase inhibitor, clade B (ovalbumin), member 1 |
| SERPINB6 | 5269 | 6p25 | 2948393 | 2972090 | 23697 | REVIEWED | serpin peptidase inhibitor, clade B (ovalbumin), member 6 |
| SERPINB8P1 | 11029 | 6p25 | 3049072 | 3049468 | 396 | INFERRED | serpin peptidase inhibitor, clade B8 (ovalbumin) pseudogene 1 |
| SERPINB9 | 5272 | 6p25 | 2887504 | 2903545 | 16041 | VALIDATED | serpin peptidase inhibitor, clade B (ovalbumin), member 9 |
| SLC22A23 | 63027 | 6p25.2 | 3269207 | 3456793 | 187586 | VALIDATED | solute carrier family 22, member 23 |
| TDGF4 | 22815 | 6p25 | 3941393 | 3942457 | 1064 | INFERRED | teratocarcinoma-derived growth factor 4, pseudogene |
| TUBB2A | 7280 | 6p25 | 3153900 | 3157783 | 3883 | VALIDATED | tubulin, beta 2A |
| TUBB2B | 347733 | 6p25 | 3224495 | 3227968 | 3473 | REVIEWED | tubulin, beta 2B |
| WRNIP1 | 56897 | 6p25.2 | 2765666 | 2785979 | 20313 | REVIEWED | Werner helicase interacting protein 1 |