Publications
Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI
Gong J, Nishimura KK, Fernandez-Rhodes L, Haessler J, Bien S, Graff M, Lim U, Lu Y, Gross M, Fornage M, Yoneyama S, Isasi CR, Buzkova P, Daviglus M, Lin DY, Tao R, Goodloe R, Bush WS, Farber-Eger E, Boston J, Dilks HH, Ehret G, et al. Int J Obes (Lond). 2018 Mar;42(3):384-390. doi: 10.1038/ijo.2017.304. Epub 2017 Dec 21. PMID: 29381148.
Correction to: Transethnic insight into the genetics of glycaemic traits: fine-mapping results from the Population Architecture using Genomics and Epidemiology (PAGE) consortium
Bien SA, Pankow JS, Haessler J, Lu Y, Pankratz N, Rohde RR, Tamuno A, Carlson CS, Schumacher FR, Bůžková P, Daviglus ML, Lim U, Fornage M, Fernandez-Rhodes L, Avilés-Santa L, Buyske S, Gross MD, Graff M, Isasi CR, Kuller LH, Manson JE, Matise TC, et al. Diabetologia. 2017 Dec;60(12):2542-2543. doi: 10.1007/s00125-017-4476-z. PMID: 29038867.
Transethnic insight into the genetics of glycaemic traits: fine-mapping results from the Population Architecture using Genomics and Epidemiology (PAGE) consortium
Bien SA, Pankow JS, Haessler J, Lu YN, Pankratz N, Rohde RR, Tamuno A, Carlson CS, Schumacher FR, Bůžková P, Daviglus ML, Lim U, Fornage M, Fernandez-Rhodes L, Avilés-Santa L, Buyske S, Gross MD, Graff M, Isasi CR, Kuller LH, Manson JE, Matise TC, et al. Diabetologia. 2017 Dec;60(12):2384-2398. doi: 10.1007/s00125-017-4405-1. Epub 2017 Sep 13. PMID: 28905132.
Trans-ethnic fine-mapping of genetic loci for body mass index in the diverse ancestral populations of the Population Architecture using Genomics and Epidemiology (PAGE) Study reveals evidence for multiple signals at established loci
Fernández-Rhodes L, Gong J, Haessler J, Franceschini N, Graff M, Nishimura KK, Wang Y, Highland HM, Yoneyama S, Bush WS, Goodloe R, Ritchie MD, Crawford D, Gross M, Fornage M, Buzkova P, Tao R, Isasi C, Avilés-Santa L, Daviglus M, Mackey RH, Houston D, et al. Hum Genet. 2017 Jun;136(6):771-800. doi: 10.1007/s00439-017-1787-6. Epub 2017 Apr 8. PMID: 28391526.
Strategies for Enriching Variant Coverage in Candidate Disease Loci on a Multiethnic Genotyping Array
Bien SA, Wojcik GL, Zubair N, Gignoux CR, Martin AR, Kocarnik JM, Martin LW, Buyske S, Haessler J, Walker RW, Cheng I, Graff M, Xia L, Franceschini N, Matise T, James R, Hindorff L, Le Marchand L, North KE, Haiman CA, Peters U, Loos RJ, et al. PLoS One. 2016 Dec 14;11(12):e0167758. doi: 10.1371/journal.pone.0167758. eCollection 2016. PMID: 27973554.
Generalization and fine mapping of European ancestry-based central adiposity variants in African ancestry populations
Yoneyama S, Yao J, Guo X, Fernandez-Rhodes L, Lim U, Boston J, Buzková P, Carlson CS, Cheng I, Cochran B, Cooper R, Ehret G, Fornage M, Gong J, Gross M, Gu CC, Haessler J, Haiman CA, Henderson B, Hindorff LA, Houston D, Irvin MR, et al. Int J Obes (Lond). 2017 Feb;41(2):324-331. doi: 10.1038/ijo.2016.207. Epub 2016 Nov 21. PMID: 27867202.
Pleiotropic and sex-specific effects of cancer GWAS SNPs on melanoma risk in the population architecture using genomics and epidemiology (PAGE) study
Kocarnik JM, Park SL, Han J, Dumitrescu L, Cheng I, Wilkens LR, Schumacher FR, Kolonel L, Carlson CS, Crawford DC, Goodloe RJ, Dilks HH, Baker P, Richardson D, Matise TC, Ambite JL, Song F, Qureshi AA, Zhang M, Duggan D, Hutter C, Hindorff L, et al. PLoS One. 2015 Mar 19;10(3):e0120491. doi: 10.1371/journal.pone.0120491. eCollection 2015. PMID: 25789475.
The orphan GPCR, Gpr161, regulates the retinoic acid and canonical Wnt pathways during neurulation
Li BI, Matteson PG, Ababon MF, Nato AQ Jr, Lin Y, Nanda V, Matise TC, Millonig JH. Dev Biol. 2015 Jun 1;402(1):17-31. doi: 10.1016/j.ydbio.2015.02.007. Epub 2015 Mar 6. PMID: 25753732.
Genetic studies of body mass index yield new insights for obesity biology
Locke AE, Kahali B, Berndt SI, Justice AE, Pers TH, Day FR, Powell C, Vedantam S, Buchkovich ML, Yang J, Croteau-Chonka DC, Esko T, Fall T, Ferreira T, Gustafsson S, Kutalik Z, Luan J, Mägi R, Randall JC, Winkler TW, Wood AR, Workalemahu T, et al. Nature. 2015 Feb 12;518(7538):197-206. doi: 10.1038/nature14177. PMID: 25673413.
New genetic loci link adipose and insulin biology to body fat distribution
Shungin D, Winkler TW, Croteau-Chonka DC, Ferreira T, Locke AE, Mägi R, Strawbridge RJ, Pers TH, Fischer K, Justice AE, Workalemahu T, Wu JMW, Buchkovich ML, Heard-Costa NL, Roman TS, Drong AW, Song C, Gustafsson S, Day FR, Esko T, Fall T, Kutalik Z, et al. Nature. 2015 Feb 12;518(7538):187-196. doi: 10.1038/nature14132. PMID: 25673412.
Mapping genes with longitudinal phenotypes via Bayesian posterior probabilities
Musolf A, Nato AQ Jr, Londono D, Zhou L, Matise TC, Gordon D. BMC Proc. 2014 Jun 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S81. doi: 10.1186/1753-6561-8-S1-S81. eCollection 2014. PMID: 25519410.
Defining the role of common variation in the genomic and biological architecture of adult human height
Wood AR, Esko T, Yang J, Vedantam S, Pers TH, Gustafsson S, Chu AY, Estrada K, Luan J, Kutalik Z, Amin N, Buchkovich ML, Croteau-Chonka DC, Day FR, Duan Y, Fall T, Fehrmann R, Ferreira T, Jackson AU, Karjalainen J, Lo KS, Locke AE, et al. Nat Genet. 2014 Nov;46(11):1173-86. doi: 10.1038/ng.3097. Epub 2014 Oct 5. PMID: 25282103.
Genetic determinants of age-related macular degeneration in diverse populations from the PAGE study
Restrepo NA, Spencer KL, Goodloe R, Garrett TA, Heiss G, Bůžková P, Jorgensen N, Jensen RA, Matise TC, Hindorff LA, Klein BE, Klein R, Wong TY, Cheng CY, Cornes BK, Tai ES, Ritchie MD, Haines JL, Crawford DC. Invest Ophthalmol Vis Sci. 2014 Sep 9;55(10):6839-50. doi: 10.1167/iovs.14-14246. PMID: 25205864.
Association of cancer susceptibility variants with risk of multiple primary cancers: The population architecture using genomics and epidemiology study
Park SL, Caberto CP, Lin Y, Goodloe RJ, Dumitrescu L, Love SA, Matise TC, Hindorff LA, Fowke JH, Schumacher FR, Beebe-Dimmer J, Chen C, Hou L, Thomas F, Deelman E, Han Y, Peters U, North KE, Heiss G, Crawford DC, Haiman CA, Wilkens LR, et al. Cancer Epidemiol Biomarkers Prev. 2014 Nov;23(11):2568-78. doi: 10.1158/1055-9965.EPI-14-0129. Epub 2014 Aug 19. PMID: 25139936.
Pleiotropy of cancer susceptibility variants on the risk of non-Hodgkin lymphoma: the PAGE consortium
Lim U, Kocarnik JM, Bush WS, Matise TC, Caberto C, Park SL, Carlson CS, Deelman E, Duggan D, Fesinmeyer M, Haiman CA, Henderson BE, Hindorff LA, Kolonel LN, Peters U, Stram DO, Tiirikainen M, Wilkens LR, Wu C, Kooperberg C, Le Marchand L. PLoS One. 2014 Mar 5;9(3):e89791. doi: 10.1371/journal.pone.0089791. eCollection 2014. PMID: 24598796.
Fine Mapping and Identification of BMI Loci in African Americans
Gong J, Schumacher F, Lim U, Hindorff LA, Haessler J, Buyske S, Carlson CS, Rosse S, Bůžková P, Fornage M, Gross M, Pankratz N, Pankow JS, Schreiner PJ, Cooper R, Ehret G, Gu CC, Houston D, Irvin MR, Jackson R, Kuller L, Henderson B, et al. Am J Hum Genet. 2013 Oct 3;93(4):661-71. doi: 10.1016/j.ajhg.2013.08.012. PMID: 24094743.
Generalization and dilution of association results from European GWAS in populations of non-European ancestry: the PAGE study
Carlson CS, Matise TC, North KE, Haiman CA, Fesinmeyer MD, Buyske S, Schumacher FR, Peters U, Franceschini N, Ritchie MD, Duggan DJ, Spencer KL, Dumitrescu L, Eaton CB, Thomas F, Young A, Carty C, Heiss G, Le Marchand L, Crawford DC, Hindorff LA, Kooperberg CL; et al. PLoS Biol. 2013 Sep;11(9):e1001661. doi: 10.1371/journal.pbio.1001661. Epub 2013 Sep 17. PMID: 24068893.
Imputation of coding variants in African Americans: better performance using data from the exome sequencing project
Duan Q, Liu EY, Auer PL, Zhang G, Lange EM, Jun G, Bizon C, Jiao S, Buyske S, Franceschini N, Carlson CS, Hsu L, Reiner AP, Peters U, Haessler J, Curtis K, Wassel CL, Robinson JG, Martin LW, Haiman CA, Le Marchand L, Matise TC, et al. Bioinformatics. 2013 Nov 1;29(21):2744-9. doi: 10.1093/bioinformatics/btt477. Epub 2013 Aug 16. PMID: 23956302.
Genetic risk factors for BMI and obesity in an ethnically diverse population: results from the population architecture using genomics and epidemiology (PAGE) study
Fesinmeyer MD, North KE, Ritchie MD, Lim U, Franceschini N, Wilkens LR, Gross MD, Bůžková P, Glenn K, Quibrera PM, Fernández-Rhodes L, Li Q, Fowke JH, Li R, Carlson CS, Prentice RL, Kuller LH, Manson JE, Matise TC, Cole SA, Chen CT, Howard BV, et al. Obesity (Silver Spring). 2013 Apr;21(4):835-46. doi: 10.1002/oby.20268. PMID: 23712987.
Lack of associations of ten candidate coronary heart disease risk genetic variants and subclinical atherosclerosis in four US populations: the Population Architecture using Genomics and Epidemiology (PAGE) study
Zhang L, Buzkova P, Wassel CL, Roman MJ, North KE, Crawford DC, Boston J, Brown-Gentry KD, Cole SA, Deelman E, Goodloe R, Wilson S, Heiss G, Jenny NS, Jorgensen NW, Matise TC, McClellan BE Jr, Nato AQ Jr, Ritchie MD, Franceschini N, Kao WH. Atherosclerosis. 2013 Jun;228(2):390-9. doi: 10.1016/j.atherosclerosis.2013.02.038. Epub 2013 Mar 13. PMID: 23587283.
Trans-ethnic fine-mapping of lipid loci identifies population-specific signals and allelic heterogeneity that increases the trait variance explained
Wu Y, Waite LL, Jackson AU, Sheu WH, Buyske S, Absher D, Arnett DK, Boerwinkle E, Bonnycastle LL, Carty CL, Cheng I, Cochran B, Croteau-Chonka DC, Dumitrescu L, Eaton CB, Franceschini N, Guo X, Henderson BE, Hindorff LA, Kim E, Kinnunen L, Komulainen P, et al. PLoS Genet. 2013 Mar;9(3):e1003379. doi: 10.1371/journal.pgen.1003379. Epub 2013 Mar 21. PMID: 23555291.
Association of functional polymorphism rs2231142 (Q141K) in the ABCG2 gene with serum uric acid and gout in 4 US populations: the PAGE Study
Zhang L, Spencer KL, Voruganti VS, Jorgensen NW, Fornage M, Best LG, Brown-Gentry KD, Cole SA, Crawford DC, Deelman E, Franceschini N, Gaffo AL, Glenn KR, Heiss G, Jenny NS, Kottgen A, Li Q, Liu K, Matise TC, North KE, Umans JG, Kao WH. Am J Epidemiol. 2013 May 1;177(9):923-32. doi: 10.1093/aje/kws330. Epub 2013 Apr 3. PMID: 23552988.
Replication of genetic loci for ages at menarche and menopause in the multi-ethnic Population Architecture using Genomics and Epidemiology (PAGE) study
Carty CL, Spencer KL, Setiawan VW, Fernandez-Rhodes L, Malinowski J, Buyske S, Young A, Jorgensen NW, Cheng I, Carlson CS, Brown-Gentry K, Goodloe R, Park A, Parikh NI, Henderson B, Le Marchand L, Wactawski-Wende J, Fornage M, Matise TC, Hindorff LA, Arnold AM, Haiman CA, et al. Hum Reprod. 2013 Jun;28(6):1695-706. doi: 10.1093/humrep/det071. Epub 2013 Mar 18. PMID: 23508249.
A novel method for analyzing genetic association with longitudinal phenotypes
Londono D, Chen KM, Musolf A, Wang R, Shen T, Brandon J, Herring JA, Wise CA, Zou H, Jin M, Yu L, Finch SJ, Matise TC, Gordon D. Stat Appl Genet Mol Biol. 2013 Mar 13;12(2):241-61. doi: 10.1515/sagmb-2012-0070. PMID: 23502345.
Genetic variation and reproductive timing: African American women from the Population Architecture using Genomics and Epidemiology (PAGE) Study
Spencer KL, Malinowski J, Carty CL, Franceschini N, Fernández-Rhodes L, Young A, Cheng I, Ritchie MD, Haiman CA, Wilkens L, Chunyuanwu, Matise TC, Carlson CS, Brennan K, Park A, Rajkovic A, Hindorff LA, Buyske S, Crawford DC. PLoS One. 2013;8(2):e55258. doi: 10.1371/journal.pone.0055258. Epub 2013 Feb 12. PMID: 23424626.
Phenome-wide association study (PheWAS) for detection of pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network
Pendergrass SA, Brown-Gentry K, Dudek S, Frase A, Torstenson ES, Goodloe R, Ambite JL, Avery CL, Buyske S, Bůžková P, Deelman E, Fesinmeyer MD, Haiman CA, Heiss G, Hindorff LA, Hsu CN, Jackson RD, Kooperberg C, Le Marchand L, Lin Y, Matise TC, Monroe KR, et al. PLoS Genet. 2013;9(1):e1003087. doi: 10.1371/journal.pgen.1003087. Epub 2013 Jan 31. PMID: 23382687.
A systematic mapping approach of 16q12.2/FTO and BMI in more than 20,000 African Americans narrows in on the underlying functional variation: results from the Population Architecture using Genomics and Epidemiology (PAGE) study
Peters U, North KE, Sethupathy P, Buyske S, Haessler J, Jiao S, Fesinmeyer MD, Jackson RD, Kuller LH, Rajkovic A, Lim U, Cheng I, Schumacher F, Wilkens L, Li R, Monda K, Ehret G, Nguyen KD, Cooper R, Lewis CE, Leppert M, Irvin MR, et al. PLoS Genet. 2013;9(1):e1003171. doi: 10.1371/journal.pgen.1003171. Epub 2013 Jan 17. PMID: 23341774.
Effects of smoking on the genetic risk of obesity: the population architecture using genomics and epidemiology study
Fesinmeyer MD, North KE, Lim U, Bůžková P, Crawford DC, Haessler J, Gross MD, Fowke JH, Goodloe R, Love SA, Graff M, Carlson CS, Kuller LH, Matise TC, Hong CP, Henderson BE, Allen M, Rohde RR, Mayo P, Schnetz-Boutaud N, Monroe KR, Ritchie MD, et al. BMC Med Genet. 2013 Jan 11;14:6. doi: 10.1186/1471-2350-14-6. PMID: 23311614.
The influence of obesity-related single nucleotide polymorphisms on BMI across the life course: the PAGE study
Graff M, Gordon-Larsen P, Lim U, Fowke JH, Love SA, Fesinmeyer M, Wilkens LR, Vertilus S, Ritchie MD, Prentice RL, Pankow J, Monroe K, Manson JE, Le Marchand L, Kuller LH, Kolonel LN, Hong CP, Henderson BE, Haessler J, Gross MD, Goodloe R, Franceschini N, et al. Diabetes. 2013 May;62(5):1763-7. doi: 10.2337/db12-0863. Epub 2013 Jan 8. PMID: 23300277.
Genotype imputation of Metabochip SNPs using a study-specific reference panel of ~4,000 haplotypes in African Americans from the Women's Health Initiative
Liu EY, Buyske S, Aragaki AK, Peters U, Boerwinkle E, Carlson C, Carty C, Crawford DC, Haessler J, Hindorff LA, Marchand LL, Manolio TA, Matise T, Wang W, Kooperberg C, North KE, Li Y. Genet Epidemiol. 2012 Feb;36(2):107-17. doi: 10.1002/gepi.21603. PMID: 22851474.
Evaluation of the metabochip genotyping array in African Americans and implications for fine mapping of GWAS-identified loci: the PAGE study
Buyske S, Wu Y, Carty CL, Cheng I, Assimes TL, Dumitrescu L, Hindorff LA, Mitchell S, Ambite JL, Boerwinkle E, Buzkova P, Carlson CS, Cochran B, Duggan D, Eaton CB, Fesinmeyer MD, Franceschini N, Haessler J, Jenny N, Kang HM, Kooperberg C, Lin Y, et al. PLoS One. 2012;7(4):e35651. doi: 10.1371/journal.pone.0035651. Epub 2012 Apr 23. PMID: 22539988.
Associations between incident ischemic stroke events and stroke and cardiovascular disease-related genome-wide association studies single nucleotide polymorphisms in the Population Architecture Using Genomics and Epidemiology study
Carty CL, Buzková P, Fornage M, Franceschini N, Cole S, Heiss G, Hindorff LA, Howard BV, Mann S, Martin LW, Zhang Y, Matise TC, Prentice R, Reiner AP, Kooperberg C. Circ Cardiovasc Genet. 2012 Apr 1;5(2):210-6. doi: 10.1161/CIRCGENETICS.111.962191. Epub 2012 Mar 8. Erratum in: Circ Cardiovasc Genet. 2013 Aug;6(4):e10. PMID: 22403240.
Single-variant and multi-variant trend tests for genetic association with next-generation sequencing that are robust to sequencing error
Kim W, Londono D, Zhou L, Xing J, Nato AQ, Musolf A, Matise TC, Finch SJ, Gordon D. Hum Hered. 2012;74(3-4):172-83. doi: 10.1159/000346824. Epub 2013 Apr 11. PMID: 23594495.
The Next PAGE in understanding complex traits: design for the analysis of Population Architecture Using Genetics and Epidemiology (PAGE) Study
Matise TC, Ambite JL, Buyske S, Carlson CS, Cole SA, Crawford DC, Haiman CA, Heiss G, Kooperberg C, Marchand LL, Manolio TA, North KE, Peters U, Ritchie MD, Hindorff LA, Haines JL; PAGE Study.. Am J Epidemiol. 2011 Oct 1;174(7):849-59. doi: 10.1093/aje/kwr160. Epub 2011 Aug 11. PMID: 21836165.
The use of phenome-wide association studies (PheWAS) for exploration of novel genotype-phenotype relationships and pleiotropy discovery
Pendergrass SA, Brown-Gentry K, Dudek SM, Torstenson ES, Ambite JL, Avery CL, Buyske S, Cai C, Fesinmeyer MD, Haiman C, Heiss G, Hindorff LA, Hsu CN, Jackson RD, Kooperberg C, Le Marchand L, Lin Y, Matise TC, Moreland L, Monroe K, Reiner AP, Wallace R, et al. Genet Epidemiol. 2011 Jul;35(5):410-22. doi: 10.1002/gepi.20589. Epub 2011 May 18. PMID: 21594894.
Enhanced genetic maps from family-based disease studies: population-specific comparisons
He C, Weeks DE, Buyske S, Abecasis GR, Stewart WC, Matise TC; Enhanced Map Consortium.. BMC Med Genet. 2011 Jan 19;12:15. doi: 10.1186/1471-2350-12-15. PMID: 21247494.
Contrasting methods of quantifying fine structure of human recombination
Clark AG, Wang X, Matise T. Annu Rev Genomics Hum Genet. 2010;11:45-64. doi: 10.1146/annurev-genom-082908-150031. Review. PMID: 20690817.
Transmission disequilibrium test power and sample size in the presence of locus heterogeneity
Chen C, Yang G, Buyske S, Matise T, Finch SJ, Gordon D. Stat Appl Genet Mol Biol. 2009;8:Article 44. doi: 10.2202/1544-6115.1501. Epub 2009 Oct 8. PMID: 19883370.
When a case is not a case: effects of phenotype misclassification on power and sample size requirements for the transmission disequilibrium test with affected child trios
Buyske S, Yang G, Matise TC, Gordon D. Hum Hered. 2009;67(4):287-92. doi: 10.1159/000194981. Epub 2009 Jan 27. PMID: 19172087.
A second-generation combined linkage physical map of the human genome
Matise TC, Chen F, Chen W, De La Vega FM, Hansen M, He C, Hyland FC, Kennedy GC, Kong X, Murray SS, Ziegle JS, Stewart WC, Buyske S. Genome Res. 2007 Dec;17(12):1783-6. Epub 2007 Nov 7. PMID: 17989245.
Cognitive traits link to human chromosomal regions
Buyske S, Bates ME, Gharani N, Matise TC, Tischfield JA, Manowitz P. Behav Genet. 2006 Jan;36(1):65-76. Epub 2005 Dec 10. PMID: 16341908.
Localizing the X-linked orange colour phenotype using feline resource families
Grahn RA, Lemesch BM, Millon LV, Matise T, Rogers QR, Morris JG, Fretwell N, Bailey SJ, Batt RM, Lyons LA. Anim Genet. 2005 Feb;36(1):67-70. PMID: 15670134.
A combined linkage-physical map of the human genome
Kong X, Murphy K, Raj T, He C, White PS, Matise TC. Am J Hum Genet. 2004 Dec;75(6):1143-8. Epub 2004 Oct 14. Erratum in: Am J Hum Genet. 2005 Feb;76(2):373. PMID: 15486828.
MAP-O-MAT: internet-based linkage mapping
Kong X, Matise TC. Bioinformatics. 2005 Feb 15;21(4):557-9. Epub 2004 Sep 16. PMID: 15374870.
Widespread RNA editing of embedded alu elements in the human transcriptome
Kim DD, Kim TT, Walsh T, Kobayashi Y, Matise TC, Buyske S, Gabriel A. Genome Res. 2004 Sep;14(9):1719-25. PMID: 15342557.
Age-related macular degeneration--a genome scan in extended families
Majewski J, Schultz DW, Weleber RG, Schain MB, Edwards AO, Matise TC, Acott TS, Ott J, Klein ML. Am J Hum Genet. 2003 Sep;73(3):540-50. Epub 2003 Jul 25. PMID: 12900797.
Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome
Clark AG, Nielsen R, Signorovitch J, Matise TC, Glanowski S, Heil J, Winn-Deen ES, Holden AL, Lai E. Am J Hum Genet. 2003 Aug;73(2):285-300. Epub 2003 Jul 3. PMID: 12844287.
A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set
Matise TC, Sachidanandam R, Clark AG, Kruglyak L, Wijsman E, Kakol J, Buyske S, Chui B, Cohen P, de Toma C, Ehm M, Glanowski S, He C, Heil J, Markianos K, McMullen I, Pericak-Vance MA, Silbergleit A, Stein L, Wagner M, Wilson AF, Winick JD, et al. Am J Hum Genet. 2003 Aug;73(2):271-84. Epub 2003 Jul 3. PMID: 12844283.
Map error reduction: using genetic and sequence-based physical maps to order closely linked markers
DeWan AT, Parrado AR, Matise TC, Leal SM. Hum Hered. 2002;54(1):34-44. PMID: 12446985.
Nucleotide sequence database policies
Brunak S, Danchin A, Hattori M, Nakamura H, Shinozaki K, Matise T, Preuss D. Science. 2002 Nov 15;298(5597):1333. No abstract available. PMID: 12436968.
Systematic evaluation of map quality: human chromosome 22
Matise TC, Porter CJ, Buyske S, Cuttichia AJ, Sulman EP, White PS. Am J Hum Genet. 2002 Jun;70(6):1398-410. Epub 2002 Apr 19. PMID: 11992248.
Construction of a 5000(rad) whole-genome radiation hybrid panel in the horse and generation of a comprehensive and comparative map for ECA11
Chowdhary BP, Raudsepp T, Honeycutt D, Owens EK, Piumi F, Guérin G, Matise TC, Kata SR, Womack JE, Skow LC. Mamm Genome. 2002 Feb;13(2):89-94. PMID: 11889556.
The map problem: a comparison of genetic and sequence-based physical maps
DeWan AT, Parrado AR, Matise TC, Leal SM. Am J Hum Genet. 2002 Jan;70(1):101-7. Epub 2001 Nov 9. PMID: 11706388.
A genome-wide scan for linkage to human exceptional longevity identifies a locus on chromosome 4
Puca AA, Daly MJ, Brewster SJ, Matise TC, Barrett J, Shea-Drinkwater M, Kang S, Joyce E, Nicoli J, Benson E, Kunkel LM, Perls T. Proc Natl Acad Sci U S A. 2001 Aug 28;98(18):10505-8. Epub 2001 Aug 27. PMID: 11526246.
Detailed molecular analysis of 1p36 in neuroblastoma
White PS, Thompson PM, Seifried BA, Sulman EP, Jensen SJ, Guo C, Maris JM, Hogarty MD, Allen C, Biegel JA, Matise TC, Gregory SG, Reynolds CP, Brodeur GM. Med Pediatr Oncol. 2001 Jan;36(1):37-41. PMID: 11464901.
Loss of heterozygosity for chromosome 14q in neuroblastoma
Thompson PM, Seifried BA, Kyemba SK, Jensen SJ, Guo C, Maris JM, Brodeur GM, Stram DO, Seeger RC, Gerbing R, Matthay KK, Matise TC, White PS. Med Pediatr Oncol. 2001 Jan;36(1):28-31. PMID: 11464899.
Genomic mapping and mapping databases
White PS, Matise TC. Methods Biochem Anal. 2001;43:111-53. No abstract available. PMID: 11449722.
Report of the fifth international workshop on human chromosome 1 mapping 1999
White PS, Forus A, Matise TC, Schutte BC, Spieker N, Stanier P, Vance JM, Gregory SG. Cytogenet Cell Genet. 1999;87(3-4):143-71. No abstract available. PMID: 10702659.
A comparison of two algorithms, MultiMap and gene mapping system, for automated construction of genetic linkage maps
Marinov M, Matise TC, Lathrop GM, Weeks DE. Genet Epidemiol. 1999;17 Suppl 1:S649-54. PMID: 10597508.
Power loss for multiallelic transmission/disequilibrium test when errors introduced: GAW11 simulated data
Gordon D, Matise TC, Heath SC, Ott J. Genet Epidemiol. 1999;17 Suppl 1:S587-92. PMID: 10597497.
Suggestive linkage of chromosome 10p to schizophrenia is not due to transmission ratio distortion
Faraone SV, Meyer J, Matise T, Svrakic D, Pepple J, Malaspina D, Suarez B, Hampe C, Chan G, Aelony A, Friedman JH, Kaufmann C, Cloninger CR, Tsuang MT. Am J Med Genet. 1999 Dec 15;88(6):607-8. PMID: 10581477.
A comprehensive view of human chromosome 1
White PS, Sulman EP, Porter CJ, Matise TC. Genome Res. 1999 Oct;9(10):978-88. PMID: 10523526.
A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat
Steen RG, Kwitek-Black AE, Glenn C, Gullings-Handley J, Van Etten W, Atkinson OS, Appel D, Twigger S, Muir M, Mull T, Granados M, Kissebah M, Russo K, Crane R, Popp M, Peden M, Matise T, Brown DM, Lu J, Kingsmore S, Tonellato PJ, Rozen S, et al. Genome Res. 1999 Jun;9(6):AP1-8, insert. Erratum in: Genome Res 1999 Aug;9(8):793. PMID: 10400928.
A physical map of 30,000 human genes
Deloukas P, Schuler GD, Gyapay G, Beasley EM, Soderlund C, Rodriguez-Tomé P, Hui L, Matise TC, McKusick KB, Beckmann JS, Bentolila S, Bihoreau M, Birren BB, Browne J, Butler A, Castle AB, Chiannilkulchai N, Clee C, Day PJ, Dehejia A, Dibling T, Drouot N, et al. Science. 1998 Oct 23;282(5389):744-6. PMID: 9784132.
Age-related macular degeneration. Clinical features in a large family and linkage to chromosome 1q
Klein ML, Schultz DW, Edwards A, Matise TC, Rust K, Berselli CB, Trzupek K, Weleber RG, Ott J, Wirtz MK, Acott TS. Arch Ophthalmol. 1998 Aug;116(8):1082-8. PMID: 9715689.
Genome scan of European-American schizophrenia pedigrees: results of the NIMH Genetics Initiative and Millennium Consortium
Faraone SV, Matise T, Svrakic D, Pepple J, Malaspina D, Suarez B, Hampe C, Zambuto CT, Schmitt K, Meyer J, Markel P, Lee H, Harkavy Friedman J, Kaufmann C, Cloninger CR, Tsuang MT. Am J Med Genet. 1998 Jul 10;81(4):290-5. PMID: 9674973.
NIMH Genetics Initiative Millenium Schizophrenia Consortium: linkage analysis of African-American pedigrees
Kaufmann CA, Suarez B, Malaspina D, Pepple J, Svrakic D, Markel PD, Meyer J, Zambuto CT, Schmitt K, Matise TC, Harkavy Friedman JM, Hampe C, Lee H, Shore D, Wynne D, Faraone SV, Tsuang MT, Cloninger CR. Am J Med Genet. 1998 Jul 10;81(4):282-9. PMID: 9674972.
Genome-wide search for schizophrenia susceptibility loci: the NIMH Genetics Initiative and Millennium Consortium
Cloninger CR, Kaufmann CA, Faraone SV, Malaspina D, Svrakic DM, Harkavy-Friedman J, Suarez BK, Matise TC, Shore D, Lee H, Hampe CL, Wynne D, Drain C, Markel PD, Zambuto CT, Schmitt K, Tsuang MT. Am J Med Genet. 1998 Jul 10;81(4):275-81. PMID: 9674971.
An integrated genetic linkage map of the laboratory rat
Brown DM, Matise TC, Koike G, Simon JS, Winer ES, Zangen S, McLaughlin MG, Shiozawa M, Atkinson OS, Hudson JR Jr, Chakravarti A, Lander ES, Jacob HJ. Mamm Genome. 1998 Jul;9(7):521-30. PMID: 9657848.
No evidence for significant linkage between bipolar affective disorder and chromosome 18 pericentromeric markers in a large series of multiplex extended pedigrees
Knowles JA, Rao PA, Cox-Matise T, Loth JE, de Jesus GM, Levine L, Das K, Penchaszadeh GK, Alexander JR, Lerer B, Endicott J, Ott J, Gilliam TC, Baron M. Am J Hum Genet. 1998 Apr;62(4):916-24. PMID: 9529343.
An integrated physical map of 18p11.2: a susceptibility region for bipolar disorder
Esterling LE, Cox Matise T, Sanders AR, Yoshikawa T, Overhauser J, Gershon ES, Moskowitz MT, Detera-Wadleigh SD. Mol Psychiatry. 1997 Oct-Nov;2(6):501-4. PMID: 9399696.
An integrated transcript map of human chromosome 1p35-p36
Jensen SJ, Sulman EP, Maris JM, Matise TC, Vojta PJ, Barrett JC, Brodeur GM, White PS. Genomics. 1997 May 15;42(1):126-36. PMID: 9177782.
Report and abstracts of the third international workshop on human chromosome 1 mapping 1997
Vance JM, Matise TC, Wooster R, Schutte BC, Bruns GA, van Roy N, Brodeur GM, Tao YX, Gregory S, Weith A, Vaudin M, White P. Cytogenet Cell Genet. 1997;78(3-4):154-82. No abstract available. PMID: 9465885.
Additional support for schizophrenia linkage on chromosomes 6 and 8: a multicenter study. Schizophrenia Linkage Collaborative Group for Chromosomes 3, 6 and 8
[No authors listed] Am J Med Genet. 1996 Nov 22;67(6):580-94. PMID: 8950417.
A gene map of the human genome
Schuler GD, Boguski MS, Stewart EA, Stein LD, Gyapay G, Rice K, White RE, Rodriguez-Tomé P, Aggarwal A, Bajorek E, Bentolila S, Birren BB, Butler A, Castle AB, Chiannilkulchai N, Chu A, Clee C, Cowles S, Day PJ, Dibling T, Drouot N, Dunham I, et al. Science. 1996 Oct 25;274(5287):540-6. Review. PMID: 8849440.
Meeting report. Statistical methods in genetic mapping
Matise TC, Onis-Keller H, Ott J. Genomics. 1996 Aug 15;36(1):223-5. No abstract available. PMID: 8812447.
Report and abstracts of the Third International Workshop on Human Chromosome 13 Mapping. Tarrytown, New York, October 29-31, 1995
Warburton D, Shaw SH, Matise TC, Kalachikov S, Fischer S. Cytogenet Cell Genet. 1996;75(2-3):85-110. No abstract available. PMID: 9040776.
Report of the second international workshop on human chromosome 1 mapping 1995
Weith A, Brodeur GM, Bruns GA, Matise TC, Mischke D, Nizetic D, Seldin MF, van Roy N, Vance J. Cytogenet Cell Genet. 1996;72(2-3):114-44. No abstract available. PMID: 8978760.
Fine genetic mapping of a gene for autosomal recessive retinitis pigmentosa on chromosome 6p21
Shugart YY, Banerjee P, Knowles JA, Lewis CA, Jacobson SG, Matise TC, Penchaszadeh G, Gilliam TC, Ott J. Am J Hum Genet. 1995 Aug;57(2):499-502. No abstract available. PMID: 7668276.
A gene for a severe lethal form of X-linked arthrogryposis (X-linked infantile spinal muscular atrophy) maps to human chromosome Xp11.3-q11.2
Kobayashi H, Baumbach L, Matise TC, Schiavi A, Greenberg F, Hoffman EP. Hum Mol Genet. 1995 Jul;4(7):1213-6. PMID: 8528211.
A radiation hybrid map of 95 STSs spanning human chromosome 13q
Shaw SH, Farr JE, Thiel BA, Matise TC, Weissenbach J, Chakaravarti A, Richard CW 3rd. Genomics. 1995 Jun 10;27(3):502-10. PMID: 7558033.
Towards fully automated genotyping: use of an X linked recessive spastic paraplegia family to test alternative analysis methods
Kobayashi H, Matise TC, Perlin MW, Marks HG, Hoffman EP. Hum Genet. 1995 May;95(5):483-90. Erratum in: Hum Genet 1996 Jan;97(1):126. PMID: 7759066.
Parallel computation of genetic likelihoods using CRI-MAP, PVM, and a network of distributed workstations
Matise TC, Schroeder MD, Chiarulli DM, Weeks DE. Hum Hered. 1995 Mar-Apr;45(2):103-16. PMID: 7750973.
Genome scanning for complex disease genes using the transmission/disequilibrium test and haplotype-based haplotype relative risk
Matise TC. Genet Epidemiol. 1995;12(6):641-5. PMID: 8787987.
Preliminary localization of a gene for autosomal dominant hypoparathyroidism to chromosome 3q13
Finegold DN, Armitage MM, Galiani M, Matise TC, Pandian MR, Perry YM, Deka R, Ferrell RE. Pediatr Res. 1994 Sep;36(3):414-7. PMID: 7808841.
Identity-by-descent and association mapping of a recessive gene for Hirschsprung disease on human chromosome 13q22
Puffenberger EG, Kauffman ER, Bolk S, Matise TC, Washington SS, Angrist M, Weissenbach J, Garver KL, Mascari M, Ladda R, et al. Hum Mol Genet. 1994 Aug;3(8):1217-25. PMID: 7987295.
Detection of tandem duplications and implications for linkage analysis
Matise TC, Chakravarti A, Patel PI, Lupski JR, Nelis E, Timmerman V, Van Broeckhoven C, Weeks DE. Am J Hum Genet. 1994 Jun;54(6):1110-21. PMID: 8198134.
Automated construction of genetic linkage maps using an expert system (MultiMap): a human genome linkage map
Matise TC, Perlin M, Chakravarti A. Nat Genet. 1994 Apr;6(4):384-90. Erratum in: Nat Genet 1994 Jun;7(2):215. PMID: 8054979.
Chromosome 13 and chromosome 2 (CA)n polymorphisms
Deyo AM, Matise TC, Perry YM, Ferrell RE. Hum Mol Genet. 1994 Feb;3(2):380. No abstract available. PMID: 8004114.
CEPH consortium Map of chromosome 9
Attwood J, Chiano M, Collins A, Donis-Keller H, Dracopoli N, Fountain J, Falk C, Goudie D, Gusella J, Haines J, et al. Genomics. 1994 Jan 15;19(2):203-14. PMID: 8188250.
Report and abstracts of the First International Workshop on Human Chromosome 1 Mapping 1994. Bethesda, Maryland, March 25-27, 1994
Dracopoli NC, Bruns GA, Brodeur GM, Landes GM, Matise TC, Seldin MF, Vance JM, Weith A. Cytogenet Cell Genet. 1994;67(3):144-65. No abstract available. PMID: 8062592.
A gene for Hirschsprung disease (megacolon) in the pericentromeric region of human chromosome 10
Angrist M, Kauffman E, Slaugenhaupt SA, Matise TC, Puffenberger EG, Washington SS, Lipson A, Cass DT, Reyna T, Weeks DE, et al. Nat Genet. 1993 Aug;4(4):351-6. PMID: 8401581.
A linkage map of human chromosome 21:43 PCR markers at average intervals of 2.5 cM
McInnis MG, Chakravarti A, Blaschak J, Petersen MB, Sharma V, Avramopoulos D, Blouin JL, König U, Brahe C, Matise TC, et al. Genomics. 1993 Jun;16(3):562-71. PMID: 8325627.
D21S210: a highly polymorphic (GT)n marker closely linked to the beta-amyloid protein precursor (APP) gene
Warren AC, McInnis MG, Kalaitsidaki M, Cox TK, Blaschak J, Chakravarti A, Antonarakis SE. Hum Genet. 1993 Mar;91(1):87-8. PMID: 8454294.
Detecting heterogeneity with the affected-pedigree-member (APM) method
Matise TC, Weeks DE. Genet Epidemiol. 1993;10(6):401-6. PMID: 8314034.
Linkage mapping of the cystathionine beta-synthase (CBS) gene on human chromosome 21 using a DNA polymorphism in the 3' untranslated region
Avramopoulos D, Cox T, Kraus JP, Chakravarti A, Antonarakis SE. Hum Genet. 1993 Jan;90(5):566-8. PMID: 8094069.
MultiMap: an expert system for automated genetic linkage mapping
Matise TC, Perlin M, Chakravarti A. Proc Int Conf Intell Syst Mol Biol. 1993;1:260-5. PMID: 7584344.
Cloning and linkage mapping of three polymorphic tetranucleotide (TAAA)n repeats on human chromosome 21
Kalaitsidaki M, Cox T, Chakravarti A, Antonarakis SE. Genomics. 1992 Dec;14(4):1071-5. PMID: 1478649.
Linkage mapping of the AML1 gene on human chromosome 21 using a DNA polymorphism in the 3' untranslated region
Avramopoulos D, Cox T, Blaschak JE, Chakravarti A, Antonarakis SE. Genomics. 1992 Oct;14(2):506-7. PMID: 1427868.
Comparative study of microsatellite and cytogenetic markers for detecting the origin of the nondisjoined chromosome 21 in Down syndrome
Peterson MB, Frantzen M, Antonarakis SE, Warren AC, Van Broeckhoven C, Chakravarti A, Cox TK, Lund C, Olsen B, Poulsen H, et al. Am J Hum Genet. 1992 Sep;51(3):516-25. Erratum in: Am J Hum Genet 1993 Mar;52(3):654. PMID: 1386710.
D21S215 is a (GT)n polymorphic marker close to centromeric alphoid sequences on chromosome 21
Warren AC, Petersen MB, Van Hul W, McInnis MG, Van Broeckhoven C, Cox TK, Chakravarti A, Antonarakis SE. Genomics. 1992 Aug;13(4):1365-7. PMID: 1505976.
Linkage mapping of the carbonyl reductase (CBR) gene on human chromosome 21 using a DNA polymorphism in the 3' untranslated region
Avramopoulos D, Cox T, Forrest GL, Chakravarti A, Antonarakis SE. Genomics. 1992 Jun;13(2):447-8. PMID: 1612603.
Identification of the cystic fibrosis gene: genetic analysis
Kerem B, Rommens JM, Buchanan JA, Markiewicz D, Cox TK, Chakravarti A, Buchwald M, Tsui LC. Science. 1989 Sep 8;245(4922):1073-80. PMID: 2570460.
